Software and interchange formats for computational models in bioengineering:


OpenCMISS-Iron

A distributed parallel mathematical modelling environment for complex bioengineering problems.

OpenCMISS-Zinc

A library for building interactive modelling and 3-D visualisation applications.

Cmgui

Standalone application for visualising and interacting with mathematical field models.

CMISS-cm

Original application for Continuum Mechanics, Image analysis, Signal processing and System identification.


CellML

The XML language and API for storing and exchanging mathematical models of biological systems.

OpenCOR

A cross-platform modelling environment used to organise, edit, simulate and analyse CellML files.

OpenCell

A free, open source environment for working with CellML.

FieldML

An XML language and API for mathematical field model interchange.